How to Select Promoters and Serotypes in Neurological Research?
Creative Biolabs presents selection strategies for AAV in neurological research. As a partner, we offer the following related services to help accelerate the progress of your program.
Our Services | Descriptions |
Viral Vectors | Creative Biolabs has long-term devoted to the development and application of various viral vectors for neuroscience research. Based on our advanced platforms and extensive experience, we have finished a lot of challenging work. |
Gene Therapies Study | As an innovative company in the field of neuroscience, Creative Biolabs has successfully developed advanced gene editions and delivery technologies, which provide a powerful platform for gene therapy. |
Gene-depends Neurological Disease Solutions | Creative Biolabs provides our clients around the world with gene delivery, editing, modification, improvement and silencing services through advanced and comprehensive approaches, as well as design, selection and validation of your gene therapy methods. |
Selection of AAV Serotypes
It has been reported that there are more than ten AAV serotypes applicable to the nervous system, such as 1, 2, 5, 6, 8, 9, PHP.B, PHP.eB, PHP.S, DJ, Retro, rh10, etc. Different serotypes have different infection efficiencies and spreading abilities in different parts of the nervous system, and the appropriate serotypes are related to the ability of the genes to achieve highly efficient and stable expression, and even related to the ultimate Therefore, it is important to select the appropriate AAV serotype by combining the labeled cells and the characteristics of each AAV serotype.
AAV Serotype | Descriptions |
Reversible tracer serotype - AAV2-retro | AAV2-retro, which is a vector capable of effective retrograde labeling of neural loops in the mouse brain with retrograde tracing ability and efficiency comparable to that of conventional retrograde tracers. |
Serotypes that can cis-span single-level synapses - AAV1 | AAV1 is able to propagate cis-synaptically across synapses under high titer conditions and, in combination with a Cre-dependent reporter system, efficiently and specifically drives Cre-dependent expression of exogenous genes in postsynaptic neurons for labeling postsynaptic neurons. |
Serotypes that can cross the blood-brain barrier - AAV, AAVPHP.B, AAVPHP.eB, AAVPHP.S, AAV.CPP.16 | AAV9 & AAVPHP.B & AAVPHP.eB & AAVPHP.S can effectively mediate the crossing of genes from the periphery to the central nervous system, followed by delivery of genetic material to the brain or spinal cord. |
Serotype that efficiently targets neuronal cells - AAV.CAP-B10 | AAV. CAP-B10 exhibits specificity for the central nervous system, with high targeting of neuronal cells and low targeting of the liver. |
Serotype for efficient targeting of astrocytes - rAAV11 | rAAV11 can efficiently target projection neurons retrogradely and does not exhibit cis-trans-synaptic characteristics. rAAV11 has excellent retrograde labeling efficiency. rAAV11 also has excellent retrograde labeling efficiency and can trace projection neurons that are difficult to transduce with rAAV2. |
Serotypes that efficiently target microglia - AAV-cMG & AAV-MG | AAV-MG1.1 and AAV-MG1.2, which can efficiently invade microglia in vivo without inducing microglia immune activation. AAV-cMG is suitable for in vitro invasion of cultured microglia and AAV-MG is suitable for in vivo invasion of endogenous microglia. |
Serotypes efficiently targeting central vascular endothelial cells - AAV-BI30 | AAV-BI30 is efficiently and specifically expressed in different types of central vascular endothelial cells, which is suitable for research related to neurovascular biology and contributes to the development of therapeutic approaches for endothelial dysfunction diseases. |
A number of AAV products are important tools commonly used in research. You can browse the table below to see a list of our recommended products.
Cat. No | Product Name | Types |
NTC2101070CR | AAV2 Full Capsids, Reference Standards | Reference Materials |
NRZP-0722-ZP719 | rAAV-CAG-DIO-G-Flamp1 | Fluorescent cAMP Indicators. |
NTA-2012AD-P508 | pAAV-hSyn-DIO-XCaMP-R-WPRE | Calcium Indicator |
NRZP-0622-ZP616 | AAV-EF1a-mCherry-flex-dtA | Cell Ablation |
NTA-2012-ZP303 | AAV2/2Retro-CAG-DIO-EGFP-2A-TetTox-pA | Retrograde Tracing |
NTA-2012-ZP268 | AAV2/9-hEF1a-DIO-mCherry-P2A-TetTox-WPRE-pA | Synaptic Inactivation |
NTA-2012-ZP78 | AAV2/9-hEF1a-fDIO-eNpHR 3.0-mCherry-WPRE-pA | Chemogenetic Inhibition |
NRZP-0622-ZP721 | AAV2/9-mDLX-iCRE-tdTomato-WPRE-pA | Cre Recombinase |
NRZP-0722-ZP719 | rAAV-CAG-DIO-G-Flamp1 | Neurotransmitter Sensor |
NTA-2012-ZP149 | AAV2/9-hSyn-Flpo-EGFP-WPRE-pA | Neural Tracing |
NTA-2011-ZP20 | VSV-eGFP [Vesicular Stomatitis Virus (VSV)] | Neural Tracing |
Selection of Promoters
In addition to AAV vectors and serotypes, optimization of promoters and regulatory elements is also necessary. Currently, broad-spectrum type promoters used in the study, such as
- Cytomegalovirus promoter CMV and CMV enhancer fused chicken ß-actin promoter CAG can achieve high expression of target genes.
- The tetracycline promoter TRE acts as an inducible promoter and can initiate gene expression under specific conditions.
However, the composition of the nervous system is extremely complex, and sophisticated studies of the brain are critical, and it is particularly important to select a promoter with relatively higher specificity in order to achieve specific infection of a certain brain region or even a certain class of cells.
The following table shows some common neural tissue-specific promoters.
Promoter Name | Promoter Size | Promoter Source | Promoter Applications |
hSyn | 471 bp | Human | Neuron-specific promoters |
CamKIla | 1.2 kb | Mice | Neuron-specific promoters of excitatory neurons in the neocortex and hippocampus of the brain |
c-fos | 1.7 kb | Mice | Excitatory neuron promoters |
Mecp2 | 230 bp | Mice | Short neuron-specific promoters |
NSE | 1.3 kb | Mice | Neuron-specific promoters |
Somatostat (SST) | 1.2 kb | Human | gamma aminobutyric acidergic inhibitory neuron SST subtype-specific promoter |
TH | 2.5 kb | Rat | Dopaminergic neuron-specific promoter |
GFAP | 2.0 kb | Human | Astrocyte-specific promoter |
GFAP104 | 845 bp | Human | astrocyte-specific promoter |
GfaABC1D(truncated GFAP) | 681 bp | Human | Astrocyte-specific promoters |
ALDHIL1 | 1.3 kb | Human | Astrocyte-specific promoters in the thalamus |
MBP | 1.3 kb | Human | Oligodendrocyte-specific promoter |
mDlx | 530 bp | Mice | GABAergic interneuron-specific promoter |
GAD65 | 2.5 kb | Mice | GABAergic neuron/interneuron specific promoter |
ePet-1 | 1.9 kb | Mice | Serotonin (5-light tryptamine)-ergic neuron-specific promoter |
hSyn | 471 bp | Human | Neuron-specific promoters |
Therefore, to drive more efficient gene transduction in neurological studies, all of these factors can be taken into account to optimize the choice.
- NeuroMab™ Anti-SEZ6 Antibody(NRP-0422-P515) (Cat#: NRP-0422-P515)
- NeuroMab™ Anti-F-Spondin/SPON1 Antibody, Clone N24875P (CBP11839) (Cat#: NRZP-0822-ZP4740)
- NeuroMab™ Mouse Anti-EFNB2 Monoclonal Antibody (CBP1159) (Cat#: NAB-0720-Z4396)
- NeuroMab™ Anti-GARP Antibody(NRP-0422-P1639) (Cat#: NRP-0422-P1639)
- NeuroMab™ Anti-CD32b Antibody(NRP-0422-P1803) (Cat#: NRP-0422-P1803)
- NeuroMab™ Anti-Tau Antibody(NRP-0422-P2293) (Cat#: NRP-0422-P2293)
- NeuroMab™ Anti-GD2 Antibody(NRZP-1222-ZP767) (Cat#: NRZP-1222-ZP767)
- NeuroMab™ Anti-Tau Antibody(NRP-0422-P1760) (Cat#: NRP-0422-P1760)
- NeuroMab™ Mouse Anti-SHANK3 Monoclonal Antibody (CBP929) (Cat#: NAB-0720-Z3477)
- Mouse Anti-SCN5A Monoclonal Antibody (CBP708) (Cat#: NAB-0720-Z2720)
- Mouse Retinal Ganglion Cell Line RGC-5 (Cat#: NCL2110P154)
- Mouse Glioma Cell Line GL-261-Luc (Cat#: NCL-2108P06)
- iNeu™ Human Motor Neurons (Cat#: NCL-2103-P71)
- Mouse Midbrain Dopaminergic Neuron Cell MN9D (Cat#: NCL2110P059)
- Human Brain Microvascular Endothelial Cells (Cat#: NCL-2103-P133)
- iNeu™ Human Neural Stem Cell Line (Cat#: NCL200552ZP)
- iNeu™ Human Oligodendrocyte Progenitor Cells (OPCs) (Cat#: NCL-2103-P49)
- Green Fluorescent BACE1 Cell Lines (Cat#: NCL2110P214)
- Human Dental Pulp Stem Cells (Cat#: NRZP-1122-ZP113)
- Immortalized Human Cerebral Microvascular Endothelial Cells (Cat#: NCL-2108-P020)
- Alpha-Synuclein Aggregation Assay Kit (Cat#: NRZP-1122-ZP37)
- Amyloid beta 1-42 Kit (Cat#: NRP-0322-P2170)
- Human GFAP ELISA Kit [Colorimetric] (Cat#: NPP2011ZP383)
- Beta Amyloid (1-40), Aggregation Kit (Cat#: NRZP-0323-ZP199)
- Alpha Synuclein Aggregation Kit (Cat#: NRZP-1122-ZP15)
- Beta Amyloid (1-42), Aggregation Kit (Cat#: NRZP-0323-ZP200)
- Human Poly ADP ribose polymerase,PARP Assay Kit (Cat#: NRZP-1122-ZP62)
- Human Tau Aggregation Kit (Cat#: NRP-0322-P2173)
- pAAV-syn-FLEX-jGCaMP8f-WPRE (Cat#: NTA-2106-P064)
- pAAV-syn-jGCaMP8m-WPRE (Cat#: NTA-2106-P062)
- AAV2/2Retro-CAG-DIO-EGFP-2A-TetTox-pA [Neural Tracing] (Cat#: NTA-2012-ZP303)
- Dextran, Cy5 Labeled, 2000 kDa (Cat#: NRZP-0722-ZP22)
- Dextran, NHS Activated, 40 kDa (Cat#: NRZP-0722-ZP124)
- AAV2/9-hEF1a-DIO-mCherry-P2A-TetTox-WPRE-pA (Cat#: NTA-2012-ZP268)
- VSV-eGFP (Cat#: NTA-2011-ZP20)
- pAAV-hSyn-DIO-XCaMP-R-WPRE (Cat#: NTA-2012AD-P508)
- AAV2 Full Capsids, Reference Standards (Cat#: NTC2101070CR)
- pAAV-syn-jGCaMP8f-WPRE (Cat#: NTA-2106-P061)
- Human presenilin 1 (PSEN1), transcript variant 2 (NM_007318) ORF clone, TurboGFP Tagged (Cat#: NEP-0421-R0140)
- App Rat amyloid beta (A4) precursor protein (App)(NM_019288) ORF clone, Untagged (Cat#: NEP-0421-R0053)
- Mouse SOD1 shRNA Silencing Adenovirus (Cat#: NV-2106-P14)
- Lenti of Mouse synuclein, alpha (Snca) transcript variant (NM_001042451) ORF clone, mGFP Tagged (Cat#: NEP-0521-R0864)
- Lenti of Human TAR DNA binding protein (TARDBP) (NM_007375) ORF clone, mGFP Tagged (Cat#: NEP-0521-R0832)
- Human apolipoprotein E (APOE) (NM_000041) ORF clone, Untagged (Cat#: NEP-0421-R0232)
- Tau Antisense Oligonucleotide (IONIS-MAPTRx) (Cat#: NV-2106-P29)
- Human huntingtin-associated protein 1 (HAP1) transcript variant 2 (NM_177977) ORF clone, Myc-DDK Tagged (Cat#: NEP-0521-R0676)
- ABCA1 Antisense Oligonucleotide (NV-2106-P27) (Cat#: NV-2106-P27)
- Human superoxide dismutase 3, extracellular (SOD3) (NM_003102) ORF clone, Untagged (Cat#: NEP-0521-R0808)
- NeuroBiologics™ Mouse Cerebrospinal Fluid (Cat#: NRZP-0822-ZP497)
- NeuroBiologics™ Pig Cerebrospinal Fluid (Cat#: NRZP-0822-ZP498)
- NeuroBiologics™ Rat Cerebrospinal Fluid (Cat#: NRZP-0822-ZP496)
- NeuroBiologics™ Human Cerebrospinal Fluid (Cat#: NRZP-0822-ZP491)
- NeuroBiologics™ Monkey Cerebrospinal Fluid (Cat#: NRZP-0822-ZP495)
- NeuroPro™ Anti-IDS BBB Shuttle Protein (Cat#: NRZP-0423-ZP503)
- NeuroPro™ Anti-EPO BBB Shuttle Protein (Cat#: NRZP-0423-ZP508)
- NeuroPro™ Anti-IDUA BBB Shuttle Protein (Cat#: NRZP-0423-ZP498)
- NeuroPro™ Anti-IDUA BBB Shuttle Protein (Cat#: NRZP-0423-ZP502)
- NeuroPro™ Anti-ASA BBB Shuttle Protein (Cat#: NRZP-0423-ZP504)
- NeuroPro™ Anti-GDNF BBB Shuttle Protein (Cat#: NRZP-0423-ZP500)
- NeuroPro™ Anti-SGSH BBB Shuttle Protein (Cat#: NRZP-0423-ZP505)
- NeuroPro™ Anti-TNFR BBB Shuttle Protein (Cat#: NRZP-0423-ZP510)
- NeuroPro™ Anti-GDNF BBB Shuttle Protein (Cat#: NRZP-0423-ZP509)
- NeuroPro™ Anti-idursulfase BBB Shuttle Protein (Cat#: NRZP-0423-ZP497)